Publications

2023

• G. Castillo, J.C. Mora-Diaz, M. Breuer, P. Singh, R.K. Nelli, and L. Gimenez-Lirola. Molecular mechanisms of human coronavirus NL63 infection and replication. (Virus Research 327, 199078) 
• D.A. NuccioG, M.C. Normann, B. Chai, H. Zhou, A.J. Grippo and P. Singh. Metabolome Variation in Blood and Feces as Indicator of Social Stress in Female Prairie Voles. (Int. J. Mol. Sci. 2023, 24(2), 1677) 

2022

• R. Ray and P. Singh. Prevalence and implications of STEC in Farm and Wild Ruminants. (Pathogens 2022, 11(11), 1332) 
• N. Medugu, M. Aworh, K. Iregbu, P. Nwajiobi-Princewill, K. Khadija Abdulraheem, D. Hull, L. Harden, P. Singh, S. Obaro, A. Egwuenu, and S. Thakur. Molecular Epidemiology of Clinical E. coli infections among patients attending a tertiary hospital in Abuja, Nigeria. (Sci Rep 12, 14822) 
• L. Spencer, B. Olawuni and P. Singh. Gut virome: Role and distribution in health and gastrointestinal diseases. (Front. Cell. Infect. Microbiol. 2022, 12)  
• D. Hernandez-Patlan, B. Solis-Cruz, J.D. Latorre, R. Merino-Guzman, M.M. Rodriguez, C. Ausland, X. Hernandez-Velasco, O.O. Holguin, R. Delgado, B.M. Hargis, P. Singh and G. Tellez-Isaias. Whole genome sequence and interaction analysis in the production of six enzymes from the three Bacillus strains present in a commercial direct fed microbial (Norum™) using a Bliss independence test. (Front. Vet. Sci. 2022, 9)

2021

• ST. Henderson, P. Singh, D Knupp, DW Lacher, GS Abu-Ali, JT Rudrik, and SD. Manning. Variability in the Occupancy of Escherichia coli O157 Integration Sites by Shiga Toxin-Encoding Prophages. (Toxins 2021, 13(7), 433)
• K. Vasco, B. Nohomovich, P. Singh, R.E. Mosci, D. Grooms, P. Bartlett, S. Rust, L. Zhang, and S.D. Manning. Characterizing the cattle gut microbiome in farms with a high and low prevalence of Shiga-toxin-producing Escherichia coli. (Microorganisms 2021, 9(8), 1737)

2020

• YM. Kwon, MA. Arreguin-Nava,  and P. Singh. Draft genome sequence of Clostridium perfringens strain TAMU, which causes necrotic enteritis in broiler chickens.  Microbiol Resour Announc 9:e01357-19. https://doi.org/10.1128/MRA.01357-19.
• I. Olomu, L. Pena-Cortes, R. Long, A Vyas, O. Krichevsky, R. Luellwitz, P. Singh and M.H. Mulks. Elimination of “kitome” and “splashome” contamination results in lack of detection of a unique placental microbiome. (BMC Micro. June 2020; 20, 157)

2018

• C. Gendrin, J. Vornhagen, B. Armistead, P. Singh, C. Whidbey, S. Merillat, D. Knupp, R. Parker, LM. Rogers, P. Quach, L.M Iyer, L. Aravind, and S.D. Manning, DM. Aronoff, L. Rajagopal. A non-hemolytic Group B Streptococcus strain exhibits hypervirulence. (J Infec. Dis. 2018 Mar.; 217(6):983-987)

2017

• L. Degado, P. Singh, JA. Funk, JA. Moore, EM Cannell, J. Kanesfsky, SD. Manning and KT. Scribner. Intestinal Microbial Community Dynamics of White-Tailed Deer (Odocoileus virginianus) in an Agroecosystem. (Microb. Ecol. 2017: 496-506)
• N. Medugu, KC. Iregbu, R. Parker, J.Plemmons, P. Singh, LI Audu, E. Efetie, HD. Davies and SD. Manning. Group B streptococcal colonization and transmission dynamics in pregnant women and their newborns in Nigeria: implications for prevention strategies (Clin Microbiol and Infec. 2017; 23(9): 673.e9-673.e16)

2016

• LA Boughner* and P. Singh*. Microbial Ecology: Where are we now? (Postdoc J. 2016 Nov; 4(11): 3–17.) *Authors contributed equally. 
• P. Singh and SD. Manning. Impact of age and gender on the composition and abundance of intestinal microbial communities in individuals with and without enteric infections.  (Ann. Epidemiol. 2016;1-6)
• P. Singh, D. Aronoff, H. Dele Davies and SD. Manning. Draft genome of an invasive Streptococcus agalactiae isolate lacking pigmentation. (Genome Announc. 2016, 4(1):e00015-16. doi:10.1128/genomeA.00015-16).
• W. Cha, R. Mosci, SL. Wengert, P. Singh, DW. Newton, H. Salimnia, P. Lephart, W. Khalife, LS Mansfield, JT. Rudrick and SD. Manning. Antimicrobial susceptibility profiles of human Campylobacter jejuni isolates in Michigan and the association with phylogenetic lineage and disease severity. (Frontiers in Microbiol. 2016, 7:589. doi: 10.3389/fcimb.2016.00589).
• L. Galli, V. Brusa, P. Singh, A. Cataldi, SD Manning and G. Leotta. High prevalence of Escherichia coli O157:H7 clade 8 isolated from retail meat and butcher shop environment. (Infect. Genet. Evol. 2016 doi:10.1016/j.meegid.2016.08.005)
• C. Venegas-Vargas, S. Henderson, A. Khare, RE. Mosci, JD. Lehnert, P. Singh, L. Ouellette, B. Norby, JA. Funk, S. Rust, P. Bartlett, D. Grooms and SD. Manning. Factors associated with Shiga toxin producing Escherichia coli shedding in dairy and beef cattle. Appl. Environ. Microbiol. 2016, doi:10.1128/AEM.00829-16 AEM.00829-16)

2015

• P. Singh, T. Teal, T. Marsh, J. Tiedje, K.Jernigan, R. Mosci, A. Zell, D. Newton, H. Salimnia, P. Lephart, H. Salimnia, W. Khalife, D. Sundin, RA. Britton, JT. Rudrik, and SD. Manning.  Intestinal microbial communities in patients with enteric infections and their family members.  (Microbiome 2015, 3:45  doi:10.1186/s40168-015-0109-2).
• P. Singh, R. Mosci, JT. Rudrik and SD. Manning. Draft genome sequence of a diarrheagenic Morganella morganii isolate  (Genome Announc 2015, 3(5):e01165-15.)
• P.  Singh, Q. Sha, DW. Lacher, J. Del Valle, RE. Mosci, JA. Moore, KT. Scribner and SD. Manning. Characterization of enteropathogenic and Shiga toxin-producing Escherichia coli in cattle and deer in a shared agroecosystem.  (Front Cell Infect Microbiol. 2015, 5:29.).
• N. Amigo, E. Mercado, A. Bentancor, P. Singh, D. Vilte, E. Gerhardt, E. Zotta, C. Ibarra, SD. Manning, M. Larzabal and A.A Cataldi. Clade 8 and clade 6 strains of Escherichia coli O157:H7 from cattle in Argentina have hypervirulent-like phenotypes. (PLoS One. June1, 2015 DOI: 10.1371/journal.pone.0127710)

2014

• P.  Singh and SD. Manning. Molecular Characterization of Shiga toxin producing Escherichia coli. In: DNA methods in Food Safety: Molecular Typing of Foodborne and Waterborne Bacterial Pathogens.  (eds O. A. Oyarzabal and S. Kathariou), John Wiley & Sons, Ltd, Chichester, UK. 2014 doi: 10.1002/9781118278666.ch12
• AC. Springman, DW. Lacher, EA. Waymire, SL. Wengert, P.  Singh, HD. Davies and SD. Manning. Pilus distribution among clonal lineages of group B Streptococcus: an evolutionary and clinical perspective. (BMC Microbiology.2014, 14:159 DOI: 10.1186/1471-2180-14-159)

2013

• P.  Singh and YM. Kwon. Comparative analysis of Campylobacter populations within individual market age broilers using fla gene typing method. (Poult Sci. 2013 92:2135-2144; doi:10.3382/ps.2012-02615)
• P.  Singh, A. Karimi, K. Devendra, PW. Waldroup, KK. Cho, and YM. Kwon.  Influence of penicillin on microbial diversity of the cecal microbiota in broiler chickens. (Poult Sci. 2013 Jan; 92(1):272-6. doi: 10.3382/ps.2012-02603).
• P.  Singh, SL. Foley, R. Nayak and YM. Kwon. Massively parallel sequencing of enriched target amplicons for high-resolution genotyping of Salmonella serovars. (Mol Cell Probes. 2013 Apr; 27(2):80-5. doi: 10.1016/j.mcp.2012.11.004. Epub 2012 Nov 29).

2012

• P.  Singh, AC. Springman, HD. Davies and SD. Manning. Whole Genome Shotgun Sequencing of a colonizing ST17 Streptococcus agalactiae. (J Bacteriol. 2012 Nov; 194(21):6005. doi: 10.1128/JB.01378-12).
• P.  Singh, SL. Foley, R. Nayak and YM. Kwon. Multilocus sequence typing of Salmonella strains by high-throughput sequencing of selectively amplified target genes. (J Microbiol Methods. Jan 2012; 88 (1):127-33. Epub 2011 Nov 11).

2011

• P. Singh, R. Nayak and YM Kwon. Target-enrichment through amplification of hairpin-ligated universal targets for next-generation sequencing analysis. In: Methods in molecular biology. High-throughput next generation sequencing: Methods and applications. Edited by YM Kwon and Steven C. Ricke. (Clifton, N.J.). 2011;733: 267-78.